Sandberg Lab

Ludwig Institute for Cancer Research & Department of Cell and Molecular Biology, Karolinska Institutet

RNA-Sequencing

This page list our work, resources and scripts involving RNA-Sequencing

Scripts and Resources:
RPKM calculations: rpkmforgenes.py (manual)
Exon-exon junctions: junctions2sam.py, sequence libraries: hg19_junctions_100.fa, mm9_junctions_100.fa
MULTo: uniqueness resource: website

Publications:
Alternative Isoform Regulation in Human Tissue Transcriptomes
*Wang ET, *Sandberg R, Luo S, Khrebtukova I, Zhang L, Mayr C, Kingsmore SF, Schroth GP, Burge CB.
Nature 2008. 27 Nov. 456, 470-476
[pdf, Supplemental Data]

An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data
Ramskold D., Wang ET., Burge CB., Sandberg R.
PLoS Comput Biol 2009. 11 Dec. 5, e1000598
[Link]

 
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