Sandberg Lab

Ludwig Institute for Cancer Research & Department of Cell and Molecular Biology, Karolinska Institutet

Probe Level Alternative Transcript Analysis (PLATA)

Python scripts for the analyses and visualization of probe level Affymetrix exon array data. The scripts are depending upon many different python packages which are listed in the readme.
download package

To speed up the analysis we reindexed human and mouse Affymetrix Exon Array probes by their mapping to chromosomal locations. These files are available for human and mouse. Mappings between probes and ensembl genes, transcripts and exons are provided for human and mouse for Affy Exon Arrays.

Supplemental data tables and figures are available, here

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